Courses

B07

Course Coordinator:
Kenji Doya
Course Type:
Elective
Course Category:
Mathematical and Computational Sciences
Term:
3
Credits:
2

This course introduces basic principles and practical methods in statistical testing, inference, validation, and experimental design. The lectures cover the following topics: What is probability: frequentist and Bayesian views; probability distributions; Statistical measures; Statistical dependence and independence; Stochastic processes; Information theory; Statistical testing; Statistical inference: maximum likelihood estimate and Bayesian inference; Model validation and selection; Experimental design.

B08

Course Coordinator:
Bernd Kuhn
Course Type:
Elective
Course Category:
Physics
Term:
2
Credits:
2

Principles of physics of central relevance to modern biological analysis and instrumentation are introduced with an emphasis on application in practical research areas such as electrophysiology, optogenetics, electromagnetics, the interaction of light and matter, and brain recording, stimulation, and imaging.

B09

Course Coordinator:
Gail Tripp
Course Type:
Elective
Course Category:
Neuroscience
Term:
2
Credits:
2

This course aims to introduce the function of the brain at the macroscopic level, namely, the control of behaviors and the cognitive and adaptive mechanisms behind it. The topics include the following: Reflex, classical and operant conditioning. Perception, adaptation, and attention. Feedback and predictive control. Procedural and declarative memory. Motivation and emotion. Thinking and reasoning. Communication and language. Psychological disorders. Clinical and experimental neuropsychology.

B10

Course Coordinator:
Mahesh Bandi
Course Type:
Elective
Course Category:
Physics
Term:
1
Credits:
2

Mastery of the concepts and techniques of analytical mechanics is essential to a deep understanding of physics. This course begins with basic principles and proceeds to the Newtonian equations of motion and laws of conservation. We use the Lagrange formalism to describe particle motion in multiple modes, before covering the equations of Euler and Hamilton, and canonical transformations. The calculus of variation is used to develop Maupertuis’s principle and the Hamilton-Jacobi equations, providing a starting point for the consideration of waves in later courses.

B11

Course Coordinator:
Tsumoru Shintake
Course Type:
Elective
Course Category:
Physics
Term:
2
Credits:
2

A graduate course in analytical mechanics, covering the essential equations and their applications, to prepare for later courses in electrodynamics and quantum physics.  This course assumes undergraduate level knowledge of mechanics and a firm grasp of calculus and vector mathematics.

B12

Course Coordinator:
Nic Shannon
Course Type:
Elective
Course Category:
Physics
Term:
2
Credits:
2

Matter can exist in many different phases. The aim of this course is to explain why, and how one phase can transform into another. Starting from the question “what is temperature?”, the ideas of entropy, free energy, and thermal equilibrium are introduced, first in the context of thermodynamics, and then as natural consequences of a statistical description of matter. From this starting point, a simple physical picture of phase transitions is developed, with emphasis on the unifying concept of broken symmetry.

B13

Course Coordinator:
Pinaki Chakraborty
Course Type:
Elective
Course Category:
Physics
Term:
3
Credits:
2

We will introduce basic concepts of flow of fluids. We will discuss conservation laws and constitutive  equations. We will derive the Navier-Stokes equations, and study its exact and approximate solutions. Last, we will introduce the theory of hydrodynamic stability and then discuss turbulent flows. Throughout the course we will discuss a wide spectrum of flows from nature and engineering.

B14

Course Coordinator:
Gustavo Gioia
Course Type:
Elective
Course Category:
Physics
Term:
3
Credits:
2

Students are introduced to the concepts of stress and strain, and discuss conservation laws and constitutive equations. We derive the Navier equations of linear elasticity, introduce the Airy stress-function method, and solve problems to illustrate the behavior of cracks, dislocations, and force-induced singularities in applications relating to materials science, structural engineering, geophysics and other disciplines.

B15

Course Coordinator:
Hiroki Ishikawa
Course Type:
Elective
Course Category:
Molecular, Cell, and Developmental Biology
Term:
3
Credits:
2

In this course, students will learn basic principles of immunology including the cellular and molecular mechanism of innate and adaptive immunity. The course also provides the clinical importance of immunology in various diseases such as HIV/AIDS, autoimmunity and allergy. Then, students will learn how the immune response can be manipulated by vaccination to combat infectious diseases and cancer.

B16

Course Coordinator:
Evan Economo
Course Type:
Elective
Course Category:
Environmental and Ecological Sciences
Term:
2
Credits:
2

This course covers biological phenomena at or above the scale of a single organism.  We will broadly cover topics in evolutionary biology and ecology including but not limited to population genetics, animal behavior, adaptation and natural selection, speciation, phylogenetics, population biology, community ecology, ecosystem ecology, and macroecology.